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Gv/final/features2#444
giovannivolpe wants to merge 311 commits into
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gv/final/features2

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cmanzo and others added 30 commits January 22, 2026 01:23
* Update README (#442)

* Update README

Added links to the tutorials for creating custom scatterers.

* Update README

* Update README.md

---------

Co-authored-by: Alex <95913221+Pwhsky@users.noreply.github.com>

* Auto-update README-pypi.md

* removed Image

* ok

* removed Image from optics and scatterers

* Daniel's Mie scatterer.

* u

* fixed upscale with field scatterers

* u

* rolled back

momentarily removed changed to MieScatetterer suggested by Daniel. Now Upscale doesn't work with MieScatterers

* added contrast type

included objective attribute (contrast_type) to decide wether to use intensity or refractive index

* u

* rebased ok

* u

* fixed sampletomask

* u

* sampletomask torch compatible

* unified field and volume wrapper

* u

* u

* u

* u

* u

* implemented BackendDispatched

* u

* u

* eliminated dispatcher

---------

Co-authored-by: Mirja Granfors <95694095+mirjagranfors@users.noreply.github.com>
Co-authored-by: Alex <95913221+Pwhsky@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Giovanni Volpe <46021832+giovannivolpe@users.noreply.github.com>
Basically renamed the method to _action to prevent shadowing the attribute in DeepTrackNode.
giovannivolpe and others added 30 commits June 16, 2026 15:16
Updated Python version compatibility and improved text clarity.
…ch (#482)

* Update README (#442)

* Update README

Added links to the tutorials for creating custom scatterers.

* Update README

* Update README.md

---------

Co-authored-by: Alex <95913221+Pwhsky@users.noreply.github.com>

* Auto-update README-pypi.md

* Rename DTEx206_cell_counting.ipynb to DTEx215_cell_counting.ipynb

* Revert "Rename DTEx206_cell_counting.ipynb to DTEx215_cell_counting.ipynb"

This reverts commit 453a099.

* updated: DTEx215_cell_counting (#451)

* Add files via upload

* Update README.md

* renamed to DTEx215

* Auto-update README-pypi.md

* created optical, changed imports

* init

* u

* u

* bind optical submodules

* u

* dt_math

* issue with python > 3.12

* index order for compatibility with python 3.9

* imageio cleanup

* indexing

* verbose install

* force

* lightning check

* more checks

* roll back

* Rename DTEx206_cell_counting.ipynb to DTEx215_cell_counting.ipynb

* Revert "Rename DTEx206_cell_counting.ipynb to DTEx215_cell_counting.ipynb"

This reverts commit 453a099.

* updated: DTEx215_cell_counting (#451)

* Add files via upload

* Update README.md

* renamed to DTEx215

* moved tests, added cv2

* meshgrid indexing for torch

* solve issue with multiple volumes

solve issue with multiple volumes with different intensities or refractive indexes by introducing _merge_placed_volumes()

* test_dlcc corrected

* fix issue with Python 3.9

* u

* u

* u

* nu

* back

* nu

* back

* _pad_volume

* optics

* preserve autograd

* remove +=

* in-place index

* test

* tests

* u

* mie

* tests

* common_setup

* _asarray_vector

* _process_properties

* convert

* properties

* properties

* properties

* Revert "u"

This reverts commit 4f3bf3f.

* skip tests

* ok

* revert changes to properties

* u

* revert changes to mie

---------

Co-authored-by: Mirja Granfors <95694095+mirjagranfors@users.noreply.github.com>
Co-authored-by: Alex <95913221+Pwhsky@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Alex <lechal.pierre@gmail.com>
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5 participants